I have created this feature request for easier tracking of this specifically.
We really need to be able to set the current class on custom post type parent archives when viewing a post of that type. This will only be possible when Cwicly allows filtering of the classes.
Given the upcoming 1.3 release I appreciate the focus is on that. I am just re-requesting this, as we have a website releasing this week and we can’t highlight certain menu items due to this issue so for us this is high priority.